Position: Head of Bioinformatics

 

Skills and background:

Summary

A bioinformatics scientist and manager specialising in study design, classification, statistical and functional integration of high-dimensional biological (omics) data. Line management and project management/operations experience in client-facing roles.

 

Technical skills

Experience of analysing e.g.:

  • Transcriptomic data from qPCR, microarray and RNASeq
  • Genomic data from microarray and DNASeq
  • Proteomic data from microarray, LC-MS-(MS) and IHC
  • Metabolomic data from NMR, GC-MS-(MS) and LC-MS-(MS)
  • Data integration of multiple data types

Programming expertise in e.g.:

  • R/Bioconductor
  • perl
  • MATLAB
  • Java

Work experience

2011-2012: Sistemic Scotland Ltd

2008-2011: Almac Group (Almac Diagnostics)

2003-2008: Umea Plant Science Centre

 

Education

2008: PhD in Chemistry from Umeå University, Sweden

2004: MSc in Engineering Biology from Umeå University, Sweden

 

Selected publications

Kennedy RD, Bylesjö M, Kerr P, Davison T, et al. Development and Independent Validation of a Prognostic Assay for Stage II Colon Cancer Using Formalin-Fixed Paraffin-Embedded Tissue. J Clin Oncol 2011, 29(35):4620-4626.

MAQC Consortium. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol 2010, 28:827-838.

Bylesjö M, Nilsson R, et al. Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen. J Proteome Res 2009, 8:199-210.